STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUR2-5Sphinganine C4-monooxygenase; Belongs to the sterol desaturase family. (274 aa)    
Predicted Functional Partners:
SGPP1
Sphingosine-1-phosphate phosphatase 1.
    
 0.956
SGPP1-2
Sphingosine-1-phosphate phosphatase 1.
    
 0.956
SPHK
Sphingosine kinase.
   
 0.932
Saspl_005840
Uncharacterized protein.
    
 0.882
Saspl_030202
Uncharacterized protein.
    
 0.882
Saspl_033847
Uncharacterized protein.
    
 0.882
Saspl_022140
Uncharacterized protein.
    
 0.882
CERS
Ceramide synthetase.
   
 0.880
CERS-2
Ceramide synthetase.
   
 0.880
CERS-4
Ceramide synthetase.
   
 0.880
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.