STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saspl_016047Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (194 aa)    
Predicted Functional Partners:
Saspl_044639
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.512
MAN1-3
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
    
 
 0.508
CANX
Calnexin.
    
 
 0.470
CANX-2
Calnexin.
    
 
 0.470
CANX-3
Calnexin.
    
 
 0.470
CANX-4
Calnexin.
    
 
 0.470
CANX-5
Calnexin.
    
 
 0.470
Saspl_040532
Ncstrn_small domain-containing protein.
    
 
 0.463
Saspl_046586
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.455
Saspl_013759
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.455
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.