STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3-3Replication factor A3. (118 aa)    
Predicted Functional Partners:
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.977
SYF2-2
Pre-mRNA-splicing factor SYF2.
    
 0.977
Saspl_052043
Cir_N domain-containing protein.
   
 0.976
Saspl_001390
Cir_N domain-containing protein.
   
 0.976
Saspl_006694
Cir_N domain-containing protein.
   
 0.976
CDC40
Pre-mRNA-processing factor 17.
    
 0.943
Saspl_002009
WD_REPEATS_REGION domain-containing protein.
    
 0.943
Saspl_009585
WD_REPEATS_REGION domain-containing protein.
    
 0.943
CDC40-2
Pre-mRNA-processing factor 17.
    
 0.943
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.932
Your Current Organism:
Salvia splendens
NCBI taxonomy Id: 180675
Other names: S. splendens, Salvia splendens Ker Gawl., bonfire salvia, scarlet sage
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.