A0A507BYG5 protein (Synchytrium microbalum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A507BYG5

ATP-dependent RNA helicase DBP10. (1150 aa)

Predicted Functional Partners:

A0A507BT14

0.974

A0A507CCV9

0.972

NOP7

0.967

A0A507BWW5

0.958

ERB1

0.947

A0A507CBS5

0.940

A0A507BUN5

0.939

A0A507C487

0.934

A0A507BXR7

0.933

A0A507C7K4

0.927

Your Current Organism:

Synchytrium microbalum

NCBI taxonomy Id: 1806994
Other names: JEL517, S. microbalum, Synchytrium microbalum Longcore, D.R. Simmons & Letcher, 2016, Synchytrium sp. JEL517

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A507BT14	A0A507BUN5	A0A507BT14	A0A507BUN5	CP-type G domain-containing protein.	Uncharacterized protein.	0.996
A0A507BT14	A0A507BWW5	A0A507BT14	A0A507BWW5	CP-type G domain-containing protein.	RRM domain-containing protein.	0.997
A0A507BT14	A0A507BXR7	A0A507BT14	A0A507BXR7	CP-type G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.657
A0A507BT14	A0A507BYG5	A0A507BT14	A0A507BYG5	CP-type G domain-containing protein.	ATP-dependent RNA helicase DBP10.	0.974
A0A507BT14	A0A507C487	A0A507BT14	A0A507C487	CP-type G domain-containing protein.	Sas10 domain-containing protein.	0.886
A0A507BT14	A0A507C7K4	A0A507BT14	A0A507C7K4	CP-type G domain-containing protein.	Uncharacterized protein.	0.837
A0A507BT14	A0A507CBS5	A0A507BT14	A0A507CBS5	CP-type G domain-containing protein.	Brix domain-containing protein.	0.903
A0A507BT14	A0A507CCV9	A0A507BT14	A0A507CCV9	CP-type G domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.996
A0A507BT14	ERB1	A0A507BT14	A0A507CFY2	CP-type G domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
A0A507BT14	NOP7	A0A507BT14	A0A507C189	CP-type G domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
A0A507BUN5	A0A507BT14	A0A507BUN5	A0A507BT14	Uncharacterized protein.	CP-type G domain-containing protein.	0.996
A0A507BUN5	A0A507BWW5	A0A507BUN5	A0A507BWW5	Uncharacterized protein.	RRM domain-containing protein.	0.995
A0A507BUN5	A0A507BXR7	A0A507BUN5	A0A507BXR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.719
A0A507BUN5	A0A507BYG5	A0A507BUN5	A0A507BYG5	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.939
A0A507BUN5	A0A507C487	A0A507BUN5	A0A507C487	Uncharacterized protein.	Sas10 domain-containing protein.	0.843
A0A507BUN5	A0A507C7K4	A0A507BUN5	A0A507C7K4	Uncharacterized protein.	Uncharacterized protein.	0.897
A0A507BUN5	A0A507CBS5	A0A507BUN5	A0A507CBS5	Uncharacterized protein.	Brix domain-containing protein.	0.954
A0A507BUN5	A0A507CCV9	A0A507BUN5	A0A507CCV9	Uncharacterized protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.996
A0A507BUN5	ERB1	A0A507BUN5	A0A507CFY2	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
A0A507BUN5	NOP7	A0A507BUN5	A0A507C189	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995