A0A507C282 protein (Synchytrium microbalum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A507C282

Uncharacterized protein. (123 aa)

Predicted Functional Partners:

A0A507CEN7

0.998

A0A507BQL3

0.997

A0A507BXE2

0.988

A0A507CBL2

0.948

A0A507CBS6

0.941

A0A507BZS5

0.920

A0A507BZ65

0.859

A0A507BXI5

0.802

A0A507C622

0.773

A0A507BXU6

0.751

Your Current Organism:

Synchytrium microbalum

NCBI taxonomy Id: 1806994
Other names: JEL517, S. microbalum, Synchytrium microbalum Longcore, D.R. Simmons & Letcher, 2016, Synchytrium sp. JEL517

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A507BQL3	A0A507BXE2	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A507BQL3	A0A507BXI5	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A507BQL3	A0A507BXU6	Uncharacterized protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.694
A0A507BQL3	A0A507BZ65	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A507BQL3	A0A507BZS5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.905
A0A507BQL3	A0A507C282	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A507BQL3	A0A507C622	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A507BQL3	A0A507CBL2	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.976
A0A507BQL3	A0A507CBS6	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A507BQL3	A0A507CEN7	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A507BXE2	A0A507BQL3	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A507BXE2	A0A507BXU6	Uncharacterized protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.521
A0A507BXE2	A0A507BZ65	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A507BXE2	A0A507BZS5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.907
A0A507BXE2	A0A507C282	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A507BXE2	A0A507C622	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A507BXE2	A0A507CBL2	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.569
A0A507BXE2	A0A507CBS6	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A507BXE2	A0A507CEN7	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A507BXI5	A0A507BQL3	Uncharacterized protein.	Uncharacterized protein.	0.655