STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A507C603RRM domain-containing protein. (225 aa)    
Predicted Functional Partners:
A0A507BLU9
RRM domain-containing protein.
   
 0.910
A0A507BYZ9
RRM domain-containing protein.
  
0.881
A0A507CEA9
Nuclear cap-binding protein subunit 2.
   
 0.720
A0A507CFC8
MIF4G_like domain-containing protein.
    
 0.684
A0A507C1S5
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.662
A0A507C096
RPOL4c domain-containing protein.
    
 0.661
A0A507CDW2
Uncharacterized protein.
   
  0.661
A0A507BZ78
Small nuclear ribonucleoprotein G.
   
 0.659
A0A507C6S2
TFIIS-type domain-containing protein.
   
  0.658
A0A507C334
Uncharacterized protein.
   
 0.655
Your Current Organism:
Synchytrium microbalum
NCBI taxonomy Id: 1806994
Other names: JEL517, S. microbalum, Synchytrium microbalum Longcore, D.R. Simmons & Letcher, 2016, Synchytrium sp. JEL517
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