STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A507CA94PCI domain-containing protein. (427 aa)    
Predicted Functional Partners:
A0A507C111
Uncharacterized protein.
   
 
 0.958
A0A507CCU1
PCI domain-containing protein.
   
 
 0.954
SUS1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 
 0.928
A0A507C1C6
Uncharacterized protein.
    
 
 0.860
A0A507C3L5
Uncharacterized protein.
    
 
 0.854
A0A507BWK6
Uncharacterized protein.
    
 
 0.598
A0A507BZU4
WD_REPEATS_REGION domain-containing protein.
   
  
 0.492
A0A507CJT9
WD_REPEATS_REGION domain-containing protein.
   
    0.481
A0A507BVQ7
Uncharacterized protein.
   
 
 0.466
A0A507CE06
PCI domain-containing protein.
      
 0.433
Your Current Organism:
Synchytrium microbalum
NCBI taxonomy Id: 1806994
Other names: JEL517, S. microbalum, Synchytrium microbalum Longcore, D.R. Simmons & Letcher, 2016, Synchytrium sp. JEL517
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