STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntaA_1Nitrilotriacetate monooxygenase component A. (451 aa)    
Predicted Functional Partners:
soxC_1
Dibenzothiophene desulfurization enzyme C.
 
    0.898
msuD_1
Methanesulfonate monooxygenase.
 
    0.649
lgrD_1
Linear gramicidin synthase subunit D.
   
 0.638
ssuD_3
Alkanesulfonate monooxygenase.
 
    0.616
ssuD_2
Alkanesulfonate monooxygenase.
  
    0.604
ssuA_1
Putative aliphatic sulfonates-binding protein precursor.
 
 
 0.593
soxC_2
Dibenzothiophene desulfurization enzyme C.
  
    0.580
soxC_3
Dibenzothiophene desulfurization enzyme C.
  
    0.576
pip_1
Proline iminopeptidase.
  
    0.516
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
  
 
  0.507
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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