STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msrR_1Regulatory protein MsrR. (489 aa)    
Predicted Functional Partners:
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.925
KMO80443.1
AMP-binding enzyme.
       0.893
hddC
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
 
     0.865
wbbL
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
 
   
 0.862
KMO68832.1
Hypothetical protein.
  
     0.706
KMO72198.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
  
    0.669
KMO80379.1
Hypothetical protein.
  
     0.653
KMO68966.1
Alpha/beta hydrolase family protein.
  
     0.634
pmt
Putative dolichyl-phosphate-mannose--protein mannosyltransferase.
  
     0.608
KMO75665.1
Hypothetical protein.
  
    0.606
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.