STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfmCFe(3+)-citrate-binding protein YfmC precursor. (329 aa)    
Predicted Functional Partners:
yusV
Putative siderophore transport system ATP-binding protein YusV.
 
 0.996
fepD
Ferric enterobactin transport system permease protein FepD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.992
fepG
Ferric enterobactin transport system permease protein FepG; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.847
pvdA
L-ornithine 5-monooxygenase.
 
   
 0.670
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
   0.575
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
 
     0.573
KMO77050.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.535
lgrD_1
Linear gramicidin synthase subunit D.
  
  
 0.521
yqjH
NADPH-dependent ferric-chelate reductase.
 
  
 0.502
efeU_1
Ferrous iron permease EfeU.
   
  
 0.499
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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