STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acg_1Putative NAD(P)H nitroreductase acg. (331 aa)    
Predicted Functional Partners:
KMO76483.1
Universal stress protein.
 
     0.836
devR_2
Transcriptional regulatory protein DevR (DosR).
 
     0.714
cysG
Siroheme synthase.
    
 0.639
KMO76192.1
Hypothetical protein.
  
     0.628
KMO68082.1
Universal stress protein.
 
     0.622
nasF
Uroporphyrinogen-III C-methyltransferase.
  
 
 0.607
moeZ
Putative adenylyltransferase/sulfurtransferase MoeZ.
    
  0.565
dosT_2
Hypoxia sensor histidine kinase response regulator DosT.
 
     0.527
KMO76107.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.519
lgrD_1
Linear gramicidin synthase subunit D.
  
 
 0.512
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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