STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
subB_2Ferredoxin-2. (68 aa)    
Predicted Functional Partners:
KMO74987.1
Lanosterol 14-alpha demethylase.
 
  
 0.963
KMO74989.1
Hypothetical protein.
 
    0.941
fabG_25
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
    0.938
KMO74984.1
Bacterial regulatory protein, tetR family.
 
     0.925
KMO74985.1
Cytochrome P450 107B1.
 
  
 0.845
KMO74979.1
Hypothetical protein.
 
     0.790
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.707
KMO80032.1
Hypothetical protein.
 
     0.682
KMO74980.1
Carboxymuconolactone decarboxylase family protein.
 
    0.662
KMO74991.1
SnoaL-like domain protein.
 
     0.645
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.