STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csiRHTH-type transcriptional repressor CsiR. (246 aa)    
Predicted Functional Partners:
KMO68969.1
Hypothetical protein.
       0.774
cmpB_2
Bicarbonate transport system permease protein CmpB.
       0.773
ssuC_5
Putative aliphatic sulfonates transport permease protein SsuC.
       0.773
lutR_3
HTH-type transcriptional regulator LutR.
  
  
 0.744
lutR_1
HTH-type transcriptional regulator LutR.
  
  
 0.703
cmpD
Bicarbonate transport ATP-binding protein CmpD.
       0.683
pdhR
Pyruvate dehydrogenase complex repressor.
  
  
 0.656
gbsA_2
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.603
caiD_4
Carnitinyl-CoA dehydratase.
       0.603
KMO68975.1
Pyridoxamine 5'-phosphate oxidase.
       0.603
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.