STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_10Long-chain-fatty-acid--CoA ligase. (829 aa)    
Predicted Functional Partners:
lgrD_1
Linear gramicidin synthase subunit D.
 
0.972
KMO76106.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.925
lgrB
Linear gramicidin synthase subunit B.
  
 0.896
ppsC
Phthiocerol synthesis polyketide synthase type I PpsC.
  
 0.890
ppsA_3
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
  
 0.890
ppsA_7
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
  
 0.890
eryA
Erythronolide synthase, modules 1 and 2.
  
 0.884
KMO75508.1
Actinorhodin polyketide putative beta-ketoacyl synthase 1.
  
 
 0.856
ppsB_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB.
  
 0.826
ppsB_2
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB.
  
 0.826
Your Current Organism:
Mycolicibacterium obuense
NCBI taxonomy Id: 1807
Other names: ATCC 27023, CCUG 37669, CIP 106803, DSM 44075, HAMBI 2272, JCM 6372, M. obuense, Mycobacterium obuense, NCTC 10778, strain 4388, strain 47001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.