STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-4Ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (139 aa)    
Predicted Functional Partners:
KYH46364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
KYH46363.1
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.761
AZH51_11915
Hypothetical protein; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.725
KYH45213.1
Plasmid stability protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.725
KYH46016.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.697
KYH44918.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.620
KYH43490.1
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.612
KYH45371.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.574
KYH46019.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.572
KYH45488.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.567
Your Current Organism:
Branchiibius sp. NY1634622
NCBI taxonomy Id: 1807500
Other names: B. sp. NY16-3462-2, Branchiibius sp. NY16-3462-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.