Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA74407.1Two-component system response regulator DcuR; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)    
Predicted Functional Partners:
ARA74406.1
Two-component system sensor histidine kinase DcuS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
ARA76736.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
ARA78084.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.509
ARA74412.1
Malate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.494
ARA74408.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
ARA74409.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.492
ARA74405.1
Anion permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.462
rssB
Two-component system response regulator RssB; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
  
   
 0.413
ARA74653.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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