Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA74775.1Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
ARA74774.1
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
ARA74776.1
Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
ARA74773.1
P-type conjugative transfer ATPase TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
ARA74777.1
P-type conjugative transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
ARA74778.1
P-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
ARA74779.1
Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
ARA74780.1
P-type conjugative transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
ARA74781.1
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
ARA74771.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
ARA74772.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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