Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA75022.1Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)    
Predicted Functional Partners:
ARA75021.1
Type IV pilin biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
ARA75665.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.948
ARA75666.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.907
ARA75674.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.898
ARA75023.1
Prepilin peptidase-dependent pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.893
ARA75671.1
Type II secretion system protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.882
hofQ
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.808
ARA78540.1
ComEC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.769
ARA75668.1
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
ARA75667.1
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.715
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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