Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
rtcBRNA-splicing ligase RtcB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RtcB family. (466 aa)    
Predicted Functional Partners:
ARA77966.1
Transcriptional regulator; Sigma 54-dependent; regulates genes involved in forming a 2',3'-cyclic phosphodiester on RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
ARA77965.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.605
ARA76387.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.550
ARA75039.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
prfH
Peptide chain release factor H; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.440
ARA78006.1
RNA 2'-phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.435
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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