Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARA78477.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
ARA75085.1
GemA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
ARA75084.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
ARA75086.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
ARA78478.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
ARA75087.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
ARA75082.1
Type I-F CRISPR-associated endoribonuclease Cas6/Csy4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
ARA75083.1
CRISPR-associated protein Csy3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
ARA75088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.412
ARA75089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
ARA75090.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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