Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA75366.1Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
ARA75363.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ARA75364.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ARA75368.1
Type IV secretion protein DotU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ARA75362.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
ARA75367.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
ARA78495.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
ARA75365.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
ARA75361.1
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
ARA75373.1
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
ARA75372.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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