Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ARA75660.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
ARA75515.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.982
ARA78409.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.956
ARA78286.1
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.934
ARA74709.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.930
ARA74710.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.930
ARA74711.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.930
ARA77412.1
Endopolygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.927
ARA76346.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
ARA76585.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
ARA76609.1
Oligogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.900
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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