Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
ARA76173.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
ARA76506.1
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
ARA76504.1
With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
oppD
Oligopeptide ABC transporter ATP-binding protein OppD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 0.979
ARA76227.1
Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.907
ARA76509.1
Oligopeptide ABC transporter substrate-binding protein OppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.904
ARA76508.1
Oligopeptide ABC transporter substrate-binding protein OppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.903
ARA77016.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.663
ARA74414.1
Dipeptide ABC transporter permease DppB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.612
ARA75255.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.585
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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