Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARA77697.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2674 aa)    
Predicted Functional Partners:
ARA77698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.883
ARA77693.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.843
ARA77696.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.835
ARA77694.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.817
ARA77695.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.777
ARA77701.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.626
ARA77709.1
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.608
ARA76766.1
DNA translocase FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.563
ARA77705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
ARA78572.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.505
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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