Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA78146.1Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (255 aa)    
Predicted Functional Partners:
ARA78147.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.995
ARA78150.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.944
ARA78149.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.932
ARA78148.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
  
 
  0.931
ARA78454.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.857
ARA75826.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.851
ARA75825.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.843
glnP
Glutamine ABC transporter permease GlnP; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.843
ARA74695.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.767
ARA76788.1
Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.760
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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