Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARA78344.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (849 aa)    
Predicted Functional Partners:
ARA78342.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.809
ARA78341.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.784
ARA78343.1
RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.710
ARA77773.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.640
ARA77628.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.619
ARA77026.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.614
ARA74662.1
TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.608
ARA77426.1
Iron dicitrate transport regulator FecR; With FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.592
ARA77683.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.571
ARA76499.1
TonB system transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.568
Your Current Organism:
Pectobacterium brasiliense
NCBI taxonomy Id: 180957
Other names: CFBP 6617, Erwinia carotovora subsp. brasiliensis, LMG 21371, LMG:21371, NCPPB 4609, P. brasiliense, Pectobacterium brasiliense Portier et al. 2019, Pectobacterium brasiliensis, Pectobacterium carotovorum subsp. brasiliense, Pectobacterium carotovorum subsp. brasiliensis, strain 212
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