STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmI16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (282 aa)    
Predicted Functional Partners:
OOP59788.1
methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.791
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.740
OOP59786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
OOP59782.1
Energy-coupling factor transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
OOP59783.1
Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
OOP59784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.487
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
  
 0.478
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
  
 0.475
OOP59767.1
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.467
Your Current Organism:
Phytoplasma aurantifolia
NCBI taxonomy Id: 180978
Other names: C. Phytoplasma aurantifolia, Candidatus Phytoplasma aurantifolia, Candidatus Phytoplasma australasia, WBDL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.