Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| A1D16_07445 | A1D16_11810 | A1D16_07445 | A1D16_11810 | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.960 |
| A1D16_07445 | A1D16_18435 | A1D16_07445 | A1D16_18435 | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.499 |
| A1D16_07445 | KYP14690.1 | A1D16_07445 | A1D16_09835 | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.941 |
| A1D16_07445 | rpoA | A1D16_07445 | A1D16_14955 | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
| A1D16_11810 | A1D16_07445 | A1D16_11810 | A1D16_07445 | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | 0.960 |
| A1D16_11810 | A1D16_18435 | A1D16_11810 | A1D16_18435 | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.535 |
| A1D16_11810 | KYP14441.1 | A1D16_11810 | A1D16_01895 | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.959 |
| A1D16_11810 | KYP14690.1 | A1D16_11810 | A1D16_09835 | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.998 |
| A1D16_11810 | rpoA | A1D16_11810 | A1D16_14955 | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| A1D16_18435 | A1D16_07445 | A1D16_18435 | A1D16_07445 | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | 0.499 |
| A1D16_18435 | A1D16_11810 | A1D16_18435 | A1D16_11810 | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.535 |
| A1D16_18435 | KYP14441.1 | A1D16_18435 | A1D16_01895 | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.499 |
| A1D16_18435 | KYP14690.1 | A1D16_18435 | A1D16_09835 | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.535 |
| A1D16_18435 | rpoA | A1D16_18435 | A1D16_14955 | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.886 |
| KYP14441.1 | A1D16_11810 | A1D16_01895 | A1D16_11810 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
| KYP14441.1 | A1D16_18435 | A1D16_01895 | A1D16_18435 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Peptidase M4; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.499 |
| KYP14441.1 | KYP14690.1 | A1D16_01895 | A1D16_09835 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.941 |
| KYP14441.1 | rpoA | A1D16_01895 | A1D16_14955 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
| KYP14690.1 | A1D16_07445 | A1D16_09835 | A1D16_07445 | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | Argininosuccinate synthase; Metagenomic; derived from metagenome: freshwater metagenome; Belongs to the sigma-70 factor family. | 0.941 |
| KYP14690.1 | A1D16_11810 | A1D16_09835 | A1D16_11810 | DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
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