TRIM67 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIM67

Tripartite motif containing 67. (715 aa)

Predicted Functional Partners:

LOC115397780

0.673

ENSSFAP00005018149

0.592

ENSSFAP00005019308

0.592

ENSSFAP00005037451

0.592

ENSSFAP00005042610

0.592

ENSSFAP00005054471

0.592

ENSSFAP00005054943

0.592

ENSSFAP00005021786

0.572

snap47

0.518

ENSSFAP00005002941

0.455

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFAP00005002941	TRIM67	ENSSFAP00005002941	ENSSFAP00005002811	Family with sequence similarity 89 member A.	Tripartite motif containing 67.	0.455
ENSSFAP00005018149	TRIM67	ENSSFAP00005018149	ENSSFAP00005002811	annotation not available	Tripartite motif containing 67.	0.592
ENSSFAP00005019308	TRIM67	ENSSFAP00005019308	ENSSFAP00005002811	Si:ch211-57n23.4.	Tripartite motif containing 67.	0.592
ENSSFAP00005021786	TRIM67	ENSSFAP00005021786	ENSSFAP00005002811	Fibronectin type III domain containing 1.	Tripartite motif containing 67.	0.572
ENSSFAP00005037451	TRIM67	ENSSFAP00005037451	ENSSFAP00005002811	DCC netrin 1 receptor.	Tripartite motif containing 67.	0.592
ENSSFAP00005042610	TRIM67	ENSSFAP00005042610	ENSSFAP00005002811	annotation not available	Tripartite motif containing 67.	0.592
ENSSFAP00005054471	TRIM67	ENSSFAP00005054471	ENSSFAP00005002811	Immunoglobulin superfamily, DCC subclass, member 3.	Tripartite motif containing 67.	0.592
ENSSFAP00005054943	TRIM67	ENSSFAP00005054943	ENSSFAP00005002811	Neogenin 1b.	Tripartite motif containing 67.	0.592
LOC115397780	TRIM67	ENSSFAP00005006750	ENSSFAP00005002811	F-box/WD repeat-containing protein 11.	Tripartite motif containing 67.	0.673
TRIM67	ENSSFAP00005002941	ENSSFAP00005002811	ENSSFAP00005002941	Tripartite motif containing 67.	Family with sequence similarity 89 member A.	0.455
TRIM67	ENSSFAP00005018149	ENSSFAP00005002811	ENSSFAP00005018149	Tripartite motif containing 67.	annotation not available	0.592
TRIM67	ENSSFAP00005019308	ENSSFAP00005002811	ENSSFAP00005019308	Tripartite motif containing 67.	Si:ch211-57n23.4.	0.592
TRIM67	ENSSFAP00005021786	ENSSFAP00005002811	ENSSFAP00005021786	Tripartite motif containing 67.	Fibronectin type III domain containing 1.	0.572
TRIM67	ENSSFAP00005037451	ENSSFAP00005002811	ENSSFAP00005037451	Tripartite motif containing 67.	DCC netrin 1 receptor.	0.592
TRIM67	ENSSFAP00005042610	ENSSFAP00005002811	ENSSFAP00005042610	Tripartite motif containing 67.	annotation not available	0.592
TRIM67	ENSSFAP00005054471	ENSSFAP00005002811	ENSSFAP00005054471	Tripartite motif containing 67.	Immunoglobulin superfamily, DCC subclass, member 3.	0.592
TRIM67	ENSSFAP00005054943	ENSSFAP00005002811	ENSSFAP00005054943	Tripartite motif containing 67.	Neogenin 1b.	0.592
TRIM67	LOC115397780	ENSSFAP00005002811	ENSSFAP00005006750	Tripartite motif containing 67.	F-box/WD repeat-containing protein 11.	0.673
TRIM67	snap47	ENSSFAP00005002811	ENSSFAP00005019464	Tripartite motif containing 67.	Synaptosome associated protein 47.	0.518
snap47	TRIM67	ENSSFAP00005019464	ENSSFAP00005002811	Synaptosome associated protein 47.	Tripartite motif containing 67.	0.518