STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrdcyrdC N6-threonylcarbamoyltransferase domain containing. (269 aa)    
Predicted Functional Partners:
osgepl1
O-sialoglycoprotein endopeptidase like 1.
  
 
 0.916
osgep
O-sialoglycoprotein endopeptidase.
  
 
 0.913
pudp
Pseudouridine 5'-phosphatase.
  
 
  0.827
ENSSFAP00005031162
Acid phosphatase 1.
    
  0.648
mettl1
Methyltransferase like 1.
  
  
 0.629
spin1
Spindlin 1.
    
   0.602
LOC115398643
Spindlin-1-like.
    
   0.602
rad50
RAD50 double strand break repair protein.
  
   0.588
ENSSFAP00005021957
tRNA isopentenyltransferase 1.
     
 0.586
wdr4
WD repeat domain 4.
   
  
 0.576
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.