STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dus3lDihydrouridine synthase 3 like. (671 aa)    
Predicted Functional Partners:
ENSSFAP00005037364
BOP1 ribosomal biogenesis factor.
   
    0.918
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.839
mettl1
Methyltransferase like 1.
  
 
 0.837
trmt61a
tRNA methyltransferase 61A.
   
  
 0.832
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
  
 0.814
nop14
NOP14 nucleolar protein.
   
    0.803
LOC115383199-2
Peptidyl-prolyl cis-trans isomerase-like.
  
 
 0.793
wdr4
WD repeat domain 4.
   
 
 0.785
ddx18
DEAD-box helicase 18.
  
 
 0.782
ddx27
DEAD-box helicase 27.
  
 
 0.762
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.