ddx10 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ddx10

DEAD-box helicase 10. (824 aa)

Predicted Functional Partners:

utp3

0.999

nol6

0.999

abt1

0.999

LOC115403783

0.999

ddx18

0.999

rrp36

0.998

nop14

0.998

aatf

0.998

utp18

0.998

ENSSFAP00005032103

0.998

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFAP00005032103	LOC115403783	ENSSFAP00005032103	ENSSFAP00005040952	Nucleolar protein 10.	U3 small nucleolar RNA-associated protein 14 homolog A-like.	0.999
ENSSFAP00005032103	aatf	ENSSFAP00005032103	ENSSFAP00005014446	Nucleolar protein 10.	Apoptosis antagonizing transcription factor.	0.999
ENSSFAP00005032103	abt1	ENSSFAP00005032103	ENSSFAP00005033461	Nucleolar protein 10.	Activator of basal transcription 1.	0.988
ENSSFAP00005032103	ddx10	ENSSFAP00005032103	ENSSFAP00005013442	Nucleolar protein 10.	DEAD-box helicase 10.	0.998
ENSSFAP00005032103	ddx18	ENSSFAP00005032103	ENSSFAP00005045587	Nucleolar protein 10.	DEAD-box helicase 18.	0.988
ENSSFAP00005032103	nol6	ENSSFAP00005032103	ENSSFAP00005003876	Nucleolar protein 10.	Nucleolar protein 6.	0.999
ENSSFAP00005032103	nop14	ENSSFAP00005032103	ENSSFAP00005009537	Nucleolar protein 10.	NOP14 nucleolar protein.	0.999
ENSSFAP00005032103	rrp36	ENSSFAP00005032103	ENSSFAP00005004693	Nucleolar protein 10.	Ribosomal RNA processing 36.	0.965
ENSSFAP00005032103	utp18	ENSSFAP00005032103	ENSSFAP00005019738	Nucleolar protein 10.	UTP18 small subunit processome component.	0.999
ENSSFAP00005032103	utp3	ENSSFAP00005032103	ENSSFAP00005003829	Nucleolar protein 10.	UTP3 small subunit processome component.	0.999
LOC115403783	ENSSFAP00005032103	ENSSFAP00005040952	ENSSFAP00005032103	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 10.	0.999
LOC115403783	aatf	ENSSFAP00005040952	ENSSFAP00005014446	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Apoptosis antagonizing transcription factor.	0.999
LOC115403783	abt1	ENSSFAP00005040952	ENSSFAP00005033461	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Activator of basal transcription 1.	0.993
LOC115403783	ddx10	ENSSFAP00005040952	ENSSFAP00005013442	U3 small nucleolar RNA-associated protein 14 homolog A-like.	DEAD-box helicase 10.	0.999
LOC115403783	ddx18	ENSSFAP00005040952	ENSSFAP00005045587	U3 small nucleolar RNA-associated protein 14 homolog A-like.	DEAD-box helicase 18.	0.999
LOC115403783	nol6	ENSSFAP00005040952	ENSSFAP00005003876	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 6.	0.999
LOC115403783	nop14	ENSSFAP00005040952	ENSSFAP00005009537	U3 small nucleolar RNA-associated protein 14 homolog A-like.	NOP14 nucleolar protein.	0.999
LOC115403783	rrp36	ENSSFAP00005040952	ENSSFAP00005004693	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Ribosomal RNA processing 36.	0.963
LOC115403783	utp18	ENSSFAP00005040952	ENSSFAP00005019738	U3 small nucleolar RNA-associated protein 14 homolog A-like.	UTP18 small subunit processome component.	0.999
LOC115403783	utp3	ENSSFAP00005040952	ENSSFAP00005003829	U3 small nucleolar RNA-associated protein 14 homolog A-like.	UTP3 small subunit processome component.	0.999