STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpm5Transient receptor potential cation channel subfamily M member 5. (1228 aa)    
Predicted Functional Partners:
nudt9
Nudix hydrolase 9.
 
   
 0.885
ENSSFAP00005027249
Sodium channel, voltage-gated, type III, beta.
     
 0.790
ENSSFAP00005045700
Sodium channel, voltage-gated, type II, beta.
     
 0.783
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.766
ppp1cc
Protein phosphatase 1 catalytic subunit gamma.
    
  0.763
LOC115386383
Serine/threonine-protein phosphatase alpha-2 isoform-like.
    
  0.763
LOC115383245
Serine/threonine-protein phosphatase PP1-beta catalytic subunit.
    
  0.763
LOC115406247
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
    
  0.763
LOC115392779
Serine/threonine-protein phosphatase alpha-2 isoform-like.
    
  0.763
PPP1CB
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
    
  0.763
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.