lamtor4 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lamtor4

Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4. (100 aa)

Predicted Functional Partners:

lamtor1

0.999

lamtor5

0.999

lamtor2

0.997

ENSSFAP00005003946

0.996

ENSSFAP00005034172

0.995

LOC115394953

0.988

rragc

0.980

LOC115409965

0.980

LOC115406325

0.980

lamtor3

0.971

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFAP00005003946	ENSSFAP00005034172	ENSSFAP00005003946	ENSSFAP00005034172	Regulatory associated protein of MTOR, complex 1.	annotation not available	0.966
ENSSFAP00005003946	LOC115394953	ENSSFAP00005003946	ENSSFAP00005054678	Regulatory associated protein of MTOR, complex 1.	Ras-related GTP-binding protein A.	0.996
ENSSFAP00005003946	LOC115406325	ENSSFAP00005003946	ENSSFAP00005049736	Regulatory associated protein of MTOR, complex 1.	Ras-related GTP-binding protein D-like.	0.986
ENSSFAP00005003946	LOC115409965	ENSSFAP00005003946	ENSSFAP00005029939	Regulatory associated protein of MTOR, complex 1.	Ras-related GTP-binding protein C-like.	0.986
ENSSFAP00005003946	lamtor1	ENSSFAP00005003946	ENSSFAP00005009950	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.996
ENSSFAP00005003946	lamtor2	ENSSFAP00005003946	ENSSFAP00005034535	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.985
ENSSFAP00005003946	lamtor3	ENSSFAP00005003946	ENSSFAP00005027629	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.996
ENSSFAP00005003946	lamtor4	ENSSFAP00005003946	ENSSFAP00005014106	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.996
ENSSFAP00005003946	lamtor5	ENSSFAP00005003946	ENSSFAP00005051878	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.997
ENSSFAP00005003946	rragc	ENSSFAP00005003946	ENSSFAP00005026780	Regulatory associated protein of MTOR, complex 1.	Ras related GTP binding C.	0.986
ENSSFAP00005034172	ENSSFAP00005003946	ENSSFAP00005034172	ENSSFAP00005003946	annotation not available	Regulatory associated protein of MTOR, complex 1.	0.966
ENSSFAP00005034172	LOC115394953	ENSSFAP00005034172	ENSSFAP00005054678	annotation not available	Ras-related GTP-binding protein A.	0.987
ENSSFAP00005034172	LOC115406325	ENSSFAP00005034172	ENSSFAP00005049736	annotation not available	Ras-related GTP-binding protein D-like.	0.927
ENSSFAP00005034172	LOC115409965	ENSSFAP00005034172	ENSSFAP00005029939	annotation not available	Ras-related GTP-binding protein C-like.	0.927
ENSSFAP00005034172	lamtor1	ENSSFAP00005034172	ENSSFAP00005009950	annotation not available	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.995
ENSSFAP00005034172	lamtor3	ENSSFAP00005034172	ENSSFAP00005027629	annotation not available	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.502
ENSSFAP00005034172	lamtor4	ENSSFAP00005034172	ENSSFAP00005014106	annotation not available	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.995
ENSSFAP00005034172	lamtor5	ENSSFAP00005034172	ENSSFAP00005051878	annotation not available	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.995
ENSSFAP00005034172	rragc	ENSSFAP00005034172	ENSSFAP00005026780	annotation not available	Ras related GTP binding C.	0.927
LOC115394953	ENSSFAP00005003946	ENSSFAP00005054678	ENSSFAP00005003946	Ras-related GTP-binding protein A.	Regulatory associated protein of MTOR, complex 1.	0.996