STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115383491Protein Shroom3-like. (1948 aa)    
Predicted Functional Partners:
actr8
Actin related protein 8.
    
 0.790
actl6a
Actin like 6A.
   
 0.760
ruvbl1
RuvB like AAA ATPase 1.
    
 0.759
actr5
Actin related protein 5.
    
 0.756
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.745
ENSSFAP00005031330
Polymerase (RNA) mitochondrial (DNA directed).
    
 0.739
gtf2h1
General transcription factor IIH subunit 1.
    
 0.736
gtf2h3
General transcription factor IIH subunit 3.
    
 0.734
ruvbl2
RuvB like AAA ATPase 2.
   
 0.724
ino80c
INO80 complex subunit C.
    
 0.711
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.