STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx49DEAD-box helicase 49. (495 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.999
abt1
Activator of basal transcription 1.
   
 0.999
nol6
Nucleolar protein 6.
   
 0.997
bysl
Bystin like.
   
 0.997
ENSSFAP00005044241
WD repeat domain 46.
   
 0.994
ddx52
DExD-box helicase 52.
  
0.993
rbm19
RNA binding motif protein 19.
   
 0.990
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.990
pdcd11
Programmed cell death 11.
  
 0.990
utp25
UTP25 small subunit processor component.
   
 
 0.990
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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