STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH20Cadherin 20. (808 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
    
 0.949
cdh17
Cadherin 17.
     
0.916
ENSSFAP00005026606
Cadherin 22.
   
 
 
0.916
ENSSFAP00005010258
annotation not available
    
 0.900
LOC115389990
Junction plakoglobin-like.
    
 0.900
ENSSFAP00005008134
Catenin (cadherin-associated protein), alpha 2.
    
 0.888
ctnna1
Catenin alpha 1.
    
 0.888
cdh23
Cadherin related 23.
   
 
0.864
ENSSFAP00005005397
Cadherin 12, type 2a (N-cadherin 2).
  
  
0.861
ENSSFAP00005009030
annotation not available
  
  
0.861
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.