STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115400549Transmembrane protein 33-like. (248 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
    
 
 0.646
LOC115393172
Endonuclease domain-containing 1 protein-like.
    
 
 0.631
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
      
 0.547
LOC115399071
Reticulon-4-like.
    
 
 0.538
ENSSFAP00005004882
annotation not available
    
 
 0.538
ENSSFAP00005022023
Reticulon 3.
    
 
 0.538
ENSSFAP00005037628
annotation not available
    
 
 0.538
BEND4
BEN domain containing 4.
      
 0.538
rtn1
Reticulon 1.
    
 
 0.538
ENSSFAP00005042587
Reticulon 2a.
    
 
 0.538
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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