LOC115388022 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115388022

TAR DNA-binding protein 43-like. (411 aa)

Predicted Functional Partners:

LOC115381437

0.926

gsc

0.921

LOC115400213

0.918

LOC115395272

0.918

ENSSFAP00005037541

0.918

ENSSFAP00005037550

0.918

ube2i

0.916

ENSSFAP00005037439

0.916

kctd2

0.913

ewsr1

0.878

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFAP00005037439	ENSSFAP00005037541	ENSSFAP00005037439	ENSSFAP00005037541	annotation not available	annotation not available	0.659
ENSSFAP00005037439	ENSSFAP00005037550	ENSSFAP00005037439	ENSSFAP00005037550	annotation not available	annotation not available	0.659
ENSSFAP00005037439	LOC115388022	ENSSFAP00005037439	ENSSFAP00005020537	annotation not available	TAR DNA-binding protein 43-like.	0.916
ENSSFAP00005037439	LOC115395272	ENSSFAP00005037439	ENSSFAP00005030235	annotation not available	Serine/arginine-rich splicing factor 1B.	0.410
ENSSFAP00005037439	LOC115400213	ENSSFAP00005037439	ENSSFAP00005029556	annotation not available	Serine/arginine-rich splicing factor 1-like.	0.410
ENSSFAP00005037439	ube2i	ENSSFAP00005037439	ENSSFAP00005023614	annotation not available	Ubiquitin conjugating enzyme E2 I.	0.830
ENSSFAP00005037541	ENSSFAP00005037439	ENSSFAP00005037541	ENSSFAP00005037439	annotation not available	annotation not available	0.659
ENSSFAP00005037541	ENSSFAP00005037550	ENSSFAP00005037541	ENSSFAP00005037550	annotation not available	annotation not available	0.927
ENSSFAP00005037541	LOC115381437	ENSSFAP00005037541	ENSSFAP00005056219	annotation not available	Heterogeneous nuclear ribonucleoprotein M-like.	0.551
ENSSFAP00005037541	LOC115388022	ENSSFAP00005037541	ENSSFAP00005020537	annotation not available	TAR DNA-binding protein 43-like.	0.918
ENSSFAP00005037541	LOC115395272	ENSSFAP00005037541	ENSSFAP00005030235	annotation not available	Serine/arginine-rich splicing factor 1B.	0.551
ENSSFAP00005037541	LOC115400213	ENSSFAP00005037541	ENSSFAP00005029556	annotation not available	Serine/arginine-rich splicing factor 1-like.	0.551
ENSSFAP00005037541	ewsr1	ENSSFAP00005037541	ENSSFAP00005056187	annotation not available	EWS RNA binding protein 1.	0.666
ENSSFAP00005037541	kctd2	ENSSFAP00005037541	ENSSFAP00005049551	annotation not available	Potassium channel tetramerization domain containing 2.	0.659
ENSSFAP00005037541	ube2i	ENSSFAP00005037541	ENSSFAP00005023614	annotation not available	Ubiquitin conjugating enzyme E2 I.	0.659
ENSSFAP00005037550	ENSSFAP00005037439	ENSSFAP00005037550	ENSSFAP00005037439	annotation not available	annotation not available	0.659
ENSSFAP00005037550	ENSSFAP00005037541	ENSSFAP00005037550	ENSSFAP00005037541	annotation not available	annotation not available	0.927
ENSSFAP00005037550	LOC115381437	ENSSFAP00005037550	ENSSFAP00005056219	annotation not available	Heterogeneous nuclear ribonucleoprotein M-like.	0.551
ENSSFAP00005037550	LOC115388022	ENSSFAP00005037550	ENSSFAP00005020537	annotation not available	TAR DNA-binding protein 43-like.	0.918
ENSSFAP00005037550	LOC115395272	ENSSFAP00005037550	ENSSFAP00005030235	annotation not available	Serine/arginine-rich splicing factor 1B.	0.551