STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115394223E3 ubiquitin-protein ligase RNF128-like. (360 aa)    
Predicted Functional Partners:
otub1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 0.823
usp8
Ubiquitin specific peptidase 8.
    
 0.776
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.747
LOC115395768
Ubiquitin carboxyl-terminal hydrolase 2-like.
    
 0.710
LOC115401177
Ubiquitin carboxyl-terminal hydrolase 2-like.
    
 0.710
ENSSFAP00005008706
Ubiquitin specific peptidase 21.
    
 0.684
cskmt
Citrate synthase lysine methyltransferase.
    
 0.670
rps27a
Ribosomal protein S27a.
    
  0.639
ENSSFAP00005038922
Retinal outer segment membrane protein 1a.
    
 
 0.626
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.621
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.