STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115400914Vacuole membrane protein 1-like. (422 aa)    
Predicted Functional Partners:
becn1
Beclin 1.
    
 0.919
atg13
Autophagy related 13.
     
 0.896
tp53inp2
Tumor protein p53 inducible nuclear protein 2.
     
 0.854
tp53inp1
Tumor protein p53 inducible nuclear protein 1.
     
 0.845
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.547
tmem41b
Transmembrane protein 41B.
    
 0.527
atg12
Autophagy related 12.
      
 0.476
atg5
Autophagy related 5.
      
 0.461
atg3
Autophagy related 3.
   
  
 0.461
ei24
EI24 autophagy associated transmembrane protein.
      
 0.457
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.