STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1Transcription elongation regulator 1. (1015 aa)    
Predicted Functional Partners:
ddx46
DEAD-box helicase 46.
   
 0.984
ENSSFAP00005054863
Splicing factor 3a, subunit 1.
   
  0.978
LOC115392095
Microfibrillar-associated protein 1-like.
   
 0.975
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.975
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
  0.974
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
  0.974
ENSSFAP00005030947
pre-mRNA processing factor 38A.
   
 0.968
ENSSFAP00005005244
Crooked neck pre-mRNA splicing factor 1.
    
  0.965
zmat2
Zinc finger matrin-type 2.
    
  0.957
ENSSFAP00005029887
Organic solute carrier partner 1a.
    
  0.955
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.