LOC115405270 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115405270

F-box-like/WD repeat-containing protein TBL1XR1. (529 aa)

Predicted Functional Partners:

ENSSFAP00005012951

0.980

ctnnb1

0.935

HDAC3

0.907

ENSSFAP00005016868

0.903

TADA1

0.903

ENSSFAP00005054000

0.903

ENSSFAP00005045023

0.901

HDAC1

0.889

LOC115409313

0.889

hdac8

0.889

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFAP00005012951	ENSSFAP00005016868	ENSSFAP00005012951	ENSSFAP00005016868	Lysine (K)-specific methyltransferase 2E.	Nuclear receptor corepressor 1.	0.951
ENSSFAP00005012951	ENSSFAP00005054000	ENSSFAP00005012951	ENSSFAP00005054000	Lysine (K)-specific methyltransferase 2E.	Nuclear receptor corepressor 2.	0.951
ENSSFAP00005012951	HDAC1	ENSSFAP00005012951	ENSSFAP00005002014	Lysine (K)-specific methyltransferase 2E.	Probable histone deacetylase 1-B.	0.920
ENSSFAP00005012951	HDAC3	ENSSFAP00005012951	ENSSFAP00005007213	Lysine (K)-specific methyltransferase 2E.	Histone deacetylase 3.	0.920
ENSSFAP00005012951	LOC115405270	ENSSFAP00005012951	ENSSFAP00005027860	Lysine (K)-specific methyltransferase 2E.	F-box-like/WD repeat-containing protein TBL1XR1.	0.980
ENSSFAP00005012951	LOC115409313	ENSSFAP00005012951	ENSSFAP00005040713	Lysine (K)-specific methyltransferase 2E.	Probable histone deacetylase 1-B.	0.920
ENSSFAP00005012951	TADA1	ENSSFAP00005012951	ENSSFAP00005043654	Lysine (K)-specific methyltransferase 2E.	Transcriptional adaptor 1.	0.951
ENSSFAP00005012951	hdac8	ENSSFAP00005012951	ENSSFAP00005048115	Lysine (K)-specific methyltransferase 2E.	Histone deacetylase 8.	0.920
ENSSFAP00005016868	ENSSFAP00005012951	ENSSFAP00005016868	ENSSFAP00005012951	Nuclear receptor corepressor 1.	Lysine (K)-specific methyltransferase 2E.	0.951
ENSSFAP00005016868	HDAC1	ENSSFAP00005016868	ENSSFAP00005002014	Nuclear receptor corepressor 1.	Probable histone deacetylase 1-B.	0.944
ENSSFAP00005016868	HDAC3	ENSSFAP00005016868	ENSSFAP00005007213	Nuclear receptor corepressor 1.	Histone deacetylase 3.	0.987
ENSSFAP00005016868	LOC115405270	ENSSFAP00005016868	ENSSFAP00005027860	Nuclear receptor corepressor 1.	F-box-like/WD repeat-containing protein TBL1XR1.	0.903
ENSSFAP00005016868	LOC115409313	ENSSFAP00005016868	ENSSFAP00005040713	Nuclear receptor corepressor 1.	Probable histone deacetylase 1-B.	0.944
ENSSFAP00005016868	hdac8	ENSSFAP00005016868	ENSSFAP00005048115	Nuclear receptor corepressor 1.	Histone deacetylase 8.	0.923
ENSSFAP00005045023	HDAC1	ENSSFAP00005045023	ENSSFAP00005002014	annotation not available	Probable histone deacetylase 1-B.	0.694
ENSSFAP00005045023	HDAC3	ENSSFAP00005045023	ENSSFAP00005007213	annotation not available	Histone deacetylase 3.	0.694
ENSSFAP00005045023	LOC115405270	ENSSFAP00005045023	ENSSFAP00005027860	annotation not available	F-box-like/WD repeat-containing protein TBL1XR1.	0.901
ENSSFAP00005045023	LOC115409313	ENSSFAP00005045023	ENSSFAP00005040713	annotation not available	Probable histone deacetylase 1-B.	0.694
ENSSFAP00005045023	ctnnb1	ENSSFAP00005045023	ENSSFAP00005007100	annotation not available	Catenin beta 1.	0.830
ENSSFAP00005045023	hdac8	ENSSFAP00005045023	ENSSFAP00005048115	annotation not available	Histone deacetylase 8.	0.694