LOC115406797 protein (Salarias fasciatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115406797

Atypical kinase COQ8A, mitochondrial-like. (594 aa)

Predicted Functional Partners:

coq3

0.935

coq5

0.801

alad

0.797

ndufs3

0.793

ndufs2

0.735

LOC115405114

0.711

LOC115405115

0.711

coq6

0.699

LOC115391263

0.695

LOC115391264

0.695

Your Current Organism:

Salarias fasciatus

NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC115391263	LOC115406797	ENSSFAP00005053744	ENSSFAP00005029407	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	Atypical kinase COQ8A, mitochondrial-like.	0.695
LOC115391263	coq3	ENSSFAP00005053744	ENSSFAP00005031509	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	Coenzyme Q3, methyltransferase.	0.969
LOC115391263	coq5	ENSSFAP00005053744	ENSSFAP00005038449	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	Coenzyme Q5, methyltransferase.	0.970
LOC115391263	coq6	ENSSFAP00005053744	ENSSFAP00005008359	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	Coenzyme Q6, monooxygenase.	0.970
LOC115391263	ndufs2	ENSSFAP00005053744	ENSSFAP00005020417	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S2.	0.540
LOC115391264	LOC115406797	ENSSFAP00005055304	ENSSFAP00005029407	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	Atypical kinase COQ8A, mitochondrial-like.	0.695
LOC115391264	coq3	ENSSFAP00005055304	ENSSFAP00005031509	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	Coenzyme Q3, methyltransferase.	0.969
LOC115391264	coq5	ENSSFAP00005055304	ENSSFAP00005038449	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	Coenzyme Q5, methyltransferase.	0.970
LOC115391264	coq6	ENSSFAP00005055304	ENSSFAP00005008359	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	Coenzyme Q6, monooxygenase.	0.970
LOC115391264	ndufs2	ENSSFAP00005055304	ENSSFAP00005020417	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S2.	0.540
LOC115405114	LOC115406797	ENSSFAP00005045560	ENSSFAP00005029407	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	Atypical kinase COQ8A, mitochondrial-like.	0.711
LOC115405114	ndufs2	ENSSFAP00005045560	ENSSFAP00005020417	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S2.	0.999
LOC115405114	ndufs3	ENSSFAP00005045560	ENSSFAP00005024830	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S3.	0.999
LOC115405115	LOC115406797	ENSSFAP00005046029	ENSSFAP00005029407	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	Atypical kinase COQ8A, mitochondrial-like.	0.711
LOC115405115	ndufs2	ENSSFAP00005046029	ENSSFAP00005020417	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S2.	0.999
LOC115405115	ndufs3	ENSSFAP00005046029	ENSSFAP00005024830	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S3.	0.999
LOC115406797	LOC115391263	ENSSFAP00005029407	ENSSFAP00005053744	Atypical kinase COQ8A, mitochondrial-like.	Ubiquinone biosynthesis protein COQ9, mitochondrial-like.	0.695
LOC115406797	LOC115391264	ENSSFAP00005029407	ENSSFAP00005055304	Atypical kinase COQ8A, mitochondrial-like.	Ubiquinone biosynthesis protein COQ9-B, mitochondrial-like.	0.695
LOC115406797	LOC115405114	ENSSFAP00005029407	ENSSFAP00005045560	Atypical kinase COQ8A, mitochondrial-like.	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	0.711
LOC115406797	LOC115405115	ENSSFAP00005029407	ENSSFAP00005046029	Atypical kinase COQ8A, mitochondrial-like.	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like.	0.711