STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp40Small nuclear ribonucleoprotein U5 subunit 40. (347 aa)    
Predicted Functional Partners:
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
cdc40
Cell division cycle 40.
  
 
 
0.999
prpf6
pre-mRNA processing factor 6.
   
 0.999
cdc5l
Cell division cycle 5 like.
   
 0.999
ENSSFAP00005047988
pre-mRNA processing factor 19.
  
0.999
prpf8
pre-mRNA processing factor 8.
   
 0.999
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
ddx23
DEAD-box helicase 23.
    
 0.998
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.998
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.997
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.