STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc7a6osSolute carrier family 7 member 6 opposite strand. (328 aa)    
Predicted Functional Partners:
POLR2E
RNA polymerase II subunit E.
   
 
 0.941
polr2i
RNA polymerase II subunit I.
    
 
 0.921
polr2d
RNA polymerase II subunit D.
    
 
 0.911
polr2j
RNA polymerase II subunit J.
    
 
 0.902
polr2g
RNA polymerase II subunit G.
    
 
 0.882
LOC115391270
DNA-directed RNA polymerase II subunit RPB3.
    
 
 0.872
LOC115391269
DNA-directed RNA polymerase II subunit RPB3.
    
 
 0.872
polr2l
RNA polymerase II subunit L.
    
 
 0.796
polr1c
RNA polymerase I and III subunit C.
    
 
 0.771
polr2f
RNA polymerase II subunit F.
    
 
 0.704
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.