STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115398374Transitional endoplasmic reticulum ATPase. (828 aa)    
Predicted Functional Partners:
ENSSFAP00005047097
UBX domain protein 7.
   
 0.999
UBXN4
UBX domain protein 4.
    
 0.986
ubxn6
UBX domain protein 6.
    
 0.986
ubxn2a
UBX domain protein 2A.
   
 0.985
nsfl1c
NSFL1 cofactor.
   
 0.985
ENSSFAP00005004369
annotation not available
   
 0.984
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.984
faf2
Fas associated factor family member 2.
   
 0.983
faf1
Fas associated factor 1.
   
 0.983
selenos
Selenoprotein S.
    
 0.982
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.