STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf3PHD finger protein 3. (1662 aa)    
Predicted Functional Partners:
ENSSFAP00005043668
NIPBL cohesin loading factor a.
   
  
 0.965
POLR2E
RNA polymerase II subunit E.
    
  0.949
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 
  0.924
BPTF
Bromodomain PHD finger transcription factor.
   
 
 
0.892
ENSSFAP00005003635
annotation not available
    
 0.890
polr2a
RNA polymerase II subunit A.
    
 0.890
ENSSFAP00005046831
annotation not available
    
 0.890
polr2i
RNA polymerase II subunit I.
    
 0.874
polr2j
RNA polymerase II subunit J.
    
 0.854
polr2d
RNA polymerase II subunit D.
    
  0.847
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.