STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pde1bPhosphodiesterase 1B. (529 aa)    
Predicted Functional Partners:
calm1
Calmodulin.
    
 0.874
calm1-3
Calmodulin.
    
 0.874
calm1-4
Calmodulin.
    
 0.874
ENSSFAP00005021425
annotation not available
     
 0.871
LOC115393751
Heat-stable enterotoxin receptor-like.
     
 0.864
ENSSFAP00005023171
annotation not available
     
 0.864
ENSSFAP00005003649
Calmodulin-like 4b.
    
 0.861
nt5c3a
5'-nucleotidase, cytosolic IIIA.
     
 0.861
ENSSFAP00005028181
Adenosine monophosphate deaminase 3b.
     
 0.861
ak2
Adenylate kinase 2.
     
 0.858
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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