STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115387132Charged multivesicular body protein 6-like. (207 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein sorting 25 homolog.
   
 0.985
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.983
snf8
SNF8 subunit of ESCRT-II.
    
 0.982
tm9sf1
Transmembrane 9 superfamily member 1.
    
 0.978
chmp2a
Charged multivesicular body protein 2A.
   
 0.962
chmp3
Charged multivesicular body protein 3.
    
 0.960
LOC115391338
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 0.959
vps28
VPS28 subunit of ESCRT-I.
   
 0.935
LOC115394578
Charged multivesicular body protein 4c-like.
    
 0.930
LOC115407973
Charged multivesicular body protein 4b.
    
0.910
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.